feat: enhance database transactions, add Makefiles, and improve Docker setup

- Refactored database batch operations to ensure transaction atomicity and simplify nested structure.
- Added `Makefile` for `knowledge-base` and `llm-gateway` modules to streamline development workflows.
- Simplified `Dockerfile` for `llm-gateway` by removing multi-stage builds and optimizing dependencies.
- Improved code readability in `collection_manager` and `failover` modules with refined logic.
- Minor fixes in `test_server` and Redis health check handling for better diagnostics.

mcp-servers/llm-gateway/Makefile

@@ -0,0 +1,79 @@
+.PHONY: help install install-dev lint lint-fix format type-check test test-cov validate clean run
+
+# Default target
+help:
+	@echo "LLM Gateway MCP Server - Development Commands"
+	@echo ""
+	@echo "Setup:"
+	@echo "  make install       - Install production dependencies"
+	@echo "  make install-dev   - Install development dependencies"
+	@echo ""
+	@echo "Quality Checks:"
+	@echo "  make lint          - Run Ruff linter"
+	@echo "  make lint-fix      - Run Ruff linter with auto-fix"
+	@echo "  make format        - Format code with Ruff"
+	@echo "  make type-check    - Run mypy type checker"
+	@echo ""
+	@echo "Testing:"
+	@echo "  make test          - Run pytest"
+	@echo "  make test-cov      - Run pytest with coverage"
+	@echo ""
+	@echo "All-in-one:"
+	@echo "  make validate      - Run lint, type-check, and tests"
+	@echo ""
+	@echo "Running:"
+	@echo "  make run           - Run the server locally"
+	@echo ""
+	@echo "Cleanup:"
+	@echo "  make clean         - Remove cache and build artifacts"
+
+# Setup
+install:
+	@echo "Installing production dependencies..."
+	@uv pip install -e .
+
+install-dev:
+	@echo "Installing development dependencies..."
+	@uv pip install -e ".[dev]"
+
+# Quality checks
+lint:
+	@echo "Running Ruff linter..."
+	@uv run ruff check .
+
+lint-fix:
+	@echo "Running Ruff linter with auto-fix..."
+	@uv run ruff check --fix .
+
+format:
+	@echo "Formatting code..."
+	@uv run ruff format .
+
+type-check:
+	@echo "Running mypy..."
+	@uv run mypy . --ignore-missing-imports
+
+# Testing
+test:
+	@echo "Running tests..."
+	@uv run pytest tests/ -v
+
+test-cov:
+	@echo "Running tests with coverage..."
+	@uv run pytest tests/ -v --cov=. --cov-report=term-missing --cov-report=html
+
+# All-in-one validation
+validate: lint type-check test
+	@echo "All validations passed!"
+
+# Running
+run:
+	@echo "Starting LLM Gateway server..."
+	@uv run python server.py
+
+# Cleanup
+clean:
+	@echo "Cleaning up..."
+	@rm -rf __pycache__ .pytest_cache .mypy_cache .ruff_cache .coverage htmlcov
+	@find . -type d -name "__pycache__" -exec rm -rf {} + 2>/dev/null || true
+	@find . -type f -name "*.pyc" -delete 2>/dev/null || true