- Introduced end-to-end tests for MCP workflows, including server discovery, authentication, context engine operations, error handling, and input validation.
- Added full lifecycle tests for agent workflows, covering type management, instance spawning, status transitions, and admin-only operations.
- Enhanced test coverage for real-world MCP and Agent scenarios across PostgreSQL and async environments.
- Introduced a new `context` module and its endpoints for Context Management.
- Added `/context` route to the API router for assembling LLM context, token counting, budget management, and cache invalidation.
- Implemented health checks, context assembly, token counting, and caching operations in the Context Management Engine.
- Included schemas for request/response models and tightened error handling for context-related operations.
- Introduced integration tests covering backend, LLM Gateway, Knowledge Base, and Context Engine.
- Includes health checks, tool listing, token counting, and end-to-end MCP flows.
- Added `RUN_INTEGRATION_TESTS` environment flag to enable selective test execution.
- Includes a quick health check script to verify service availability before running tests.
- Added stricter budget validation in ContextRanker with explicit error handling for invalid configurations.
- Introduced `_get_valid_token_count()` helper to validate and safeguard token counts.
- Enhanced XML escaping in Claude adapter to prevent injection risks from scores and unhandled content.
- Added timeout enforcement for token counting, scoring, and compression with detailed error handling.
- Introduced tenant isolation in context caching using project and agent identifiers.
- Enhanced budget management with stricter checks for critical context overspending and buffer limitations.
- Optimized per-context locking with cleanup to prevent memory leaks in concurrent environments.
- Updated default assembly timeout settings for improved performance and reliability.
- Improved XML escaping in Claude adapter for safety against injection attacks.
- Standardized token estimation using model-specific ratios.
- Cleaned up unnecessary comments in `__all__` definitions for better readability.
- Adjusted indentation and formatting across modules for improved clarity (e.g., long lines, logical grouping).
- Simplified conditional expressions and inline comments for context scoring and ranking.
- Replaced some hard-coded values with type-safe annotations (e.g., `ClassVar`).
- Removed unused imports and ensured consistent usage across test files.
- Updated `test_score_not_cached_on_context` to clarify caching behavior.
- Improved truncation strategy logic and marker handling.
- Add tests for truncation edge cases, including zero tokens, short content, and marker handling.
- Add concurrency tests for scoring to verify per-context locking and handling of multiple contexts.
- Replace hard-coded limits with configurable settings (e.g., cache memory size, truncation strategy, relevance settings).
- Optimize parallel execution in token counting, scoring, and reranking for source diversity.
- Improve caching logic:
- Add per-context locks for safe parallel scoring.
- Reuse precomputed fingerprints for cache efficiency.
- Make truncation, scoring, and ranker behaviors fully configurable via settings.
- Add support for middle truncation, context hash-based hashing, and dynamic token limiting.
- Refactor methods for scalability and better error handling.
Tests: Updated all affected components with additional test cases.
Phase 7 of Context Management Engine - Main Engine:
- Add ContextEngine as main orchestration class
- Integrate all components: calculator, scorer, ranker, compressor, cache
- Add high-level assemble_context() API with:
- System prompt support
- Task description support
- Knowledge Base integration via MCP
- Conversation history conversion
- Tool results conversion
- Custom contexts support
- Add helper methods:
- get_budget_for_model()
- count_tokens() with caching
- invalidate_cache()
- get_stats()
- Add create_context_engine() factory function
Tests: 26 new tests, 311 total context tests passing
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Phase 5 of Context Management Engine - Model Adapters:
- Add ModelAdapter abstract base class with model matching
- Add DefaultAdapter for unknown models (plain text)
- Add ClaudeAdapter with XML-based formatting:
- <system_instructions> for system context
- <reference_documents>/<document> for knowledge
- <conversation_history>/<message> for chat
- <tool_results>/<tool_result> for tool outputs
- XML escaping for special characters
- Add OpenAIAdapter with markdown formatting:
- ## headers for sections
- ### Source headers for documents
- **ROLE** bold labels for conversation
- Code blocks for tool outputs
- Add get_adapter() factory function for model selection
Tests: 33 new tests, 256 total context tests passing
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add TokenCalculator with LLM Gateway integration for accurate token
counting with in-memory caching and fallback character-based estimation.
Implement TokenBudget for tracking allocations per context type with
budget enforcement, and BudgetAllocator for creating budgets based on
model context window sizes.
- TokenCalculator: MCP integration, caching, model-specific ratios
- TokenBudget: allocation tracking, can_fit/allocate/deallocate/reset
- BudgetAllocator: model context sizes, budget creation and adjustment
- 35 comprehensive tests covering all budget functionality
Part of #61 - Context Management Engine
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Adjusted `docker-compose.dev.yml` to reflect the new venv location.
- Modified entrypoint script and Dockerfile to reference `/opt/venv` for isolated dependencies.
- Improved bind mount setup to prevent venv overwrites during development.
- Added `record_action` in `RateLimiter` for precise tracking of slot consumption post-validation.
- Introduced deduplication mechanism for warning alerts in `CostController` to prevent spamming.
- Refactored `CostController`'s session and daily budget alert handling for improved clarity.
- Implemented test suites for `CostController` and `SafetyGuardian` to validate changes.
- Expanded integration testing to cover deduplication, validation, and loop detection edge cases.
Improved code readability and uniformity by standardizing line breaks, indentation, and inline conditions across safety-related services, models, and tests, including content filters, validation rules, and emergency controls.
The delay2 and delay3 variables were calculated but never asserted,
causing lint warnings. Added assertions to verify all delays are
positive and within max bounds.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The ContentFilter was appending references to DEFAULT_PATTERNS objects,
so when tests modified patterns (e.g., disabling them), those changes
persisted across test runs. Use dataclass replace() to create copies.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add MCPSafetyWrapper for safe MCP tool execution
- Add MCPToolCall/MCPToolResult models for MCP interactions
- Add SafeToolExecutor context manager
- Add SafetyMetrics collector with Prometheus export support
- Track validations, approvals, rate limits, budgets, and more
- Support for counters, gauges, and histograms
Issue #63🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add rollback manager with file checkpointing and transaction context
- Add HITL manager with approval queues and notification handlers
- Add content filter with PII, secrets, and injection detection
- Add emergency controls with stop/pause/resume capabilities
- Update SafetyConfig with checkpoint_dir setting
Issue #63🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Core MCP client implementation with comprehensive tooling:
**Services:**
- MCPClientManager: Main facade for all MCP operations
- MCPServerRegistry: Thread-safe singleton for server configs
- ConnectionPool: Connection pooling with auto-reconnection
- ToolRouter: Automatic tool routing with circuit breaker
- AsyncCircuitBreaker: Custom async-compatible circuit breaker
**Configuration:**
- YAML-based config with Pydantic models
- Environment variable expansion support
- Transport types: HTTP, SSE, STDIO
**API Endpoints:**
- GET /mcp/servers - List all MCP servers
- GET /mcp/servers/{name}/tools - List server tools
- GET /mcp/tools - List all tools from all servers
- GET /mcp/health - Health check all servers
- POST /mcp/call - Execute tool (admin only)
- GET /mcp/circuit-breakers - Circuit breaker status
- POST /mcp/circuit-breakers/{name}/reset - Reset circuit breaker
- POST /mcp/servers/{name}/reconnect - Force reconnection
**Testing:**
- 156 unit tests with comprehensive coverage
- Tests for all services, routes, and error handling
- Proper mocking and async test support
**Documentation:**
- MCP_CLIENT.md with usage examples
- Phase 2+ workflow documentation
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Added tests for OAuth provider admin and consent endpoints covering edge cases.
- Extended agent-related tests to handle incorrect project associations and lifecycle state transitions.
- Introduced tests for sprint status transitions and validation checks.
- Improved multiline formatting consistency across all test functions.
Reformatted multiline function calls, object definitions, and queries for improved code readability and consistency. Adjusted imports and constraints where necessary.
- Removed explicit ENUM creation statements; rely on `sa.Enum` to auto-generate ENUM types during table creation.
- Cleaned up redundant `create_type=False` arguments to streamline definitions.
## Changes
### agent_instance.py - Task Completion Counter Race Condition
- Changed `record_task_completion()` from read-modify-write pattern to
atomic SQL UPDATE
- Previously: Read instance → increment in Python memory → write back
- Now: Uses `UPDATE ... SET tasks_completed = tasks_completed + 1`
- Prevents lost updates when multiple concurrent task completions occur
### sprint.py - Row-Level Locking for Sprint Operations
- Added `with_for_update()` to `complete_sprint()` to prevent race
conditions during velocity calculation
- Added `with_for_update()` to `cancel_sprint()` for consistency
- Ensures atomic check-and-update for sprint status changes
## Impact
These fixes prevent:
- Counter metrics being lost under concurrent load
- Data corruption during sprint completion
- Race conditions with concurrent sprint status changes
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Bug Fixes:
- bulk_terminate_by_project now unassigns issues before terminating agents
to prevent orphaned issue assignments
- PATCH /issues/{id} now validates sprint status - cannot assign issues
to COMPLETED or CANCELLED sprints
- archive_project now performs cascading cleanup:
- Terminates all active agent instances
- Cancels all planned/active sprints
- Unassigns issues from terminated agents
Added edge case tests for all fixed bugs (19 new tests total):
- TestBulkTerminateEdgeCases
- TestSprintStatusValidation
- TestArchiveProjectCleanup
- TestDataIntegrityEdgeCases (IDOR protection)
Coverage: 93% (1836 tests passing)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
This commit fixes 4 production bugs found via edge case testing:
1. BUG: System allowed assigning issues to terminated agents
- Added validation in issue creation endpoint
- Added validation in issue update endpoint
- Added validation in issue assign endpoint
2. BUG: Issues remained orphaned when agent was terminated
- Agent termination now auto-unassigns all issues from that agent
These bugs could lead to issues being assigned to non-functional agents
that would never work on them, causing work to stall silently.
Tests added in tests/api/routes/syndarix/test_edge_cases.py to verify:
- Cannot assign issue to terminated agent (3 variations)
- Issues are auto-unassigned when agent is terminated
- Various other edge cases (sprints, projects, IDOR protection)
Coverage: 88% → 93% (1830 tests passing)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add 22 tests for agents API covering:
- CRUD operations (spawn, list, get, update, delete)
- Lifecycle management (pause, resume)
- Agent metrics (single and project-level)
- Authorization and access control
- Status filtering
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add 24 tests for issues API covering:
- CRUD operations (create, list, get, update, delete)
- Status and priority filtering
- Search functionality
- Issue statistics
- Authorization and access control
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add 46 tests for projects API covering:
- CRUD operations (create, list, get, update, archive)
- Lifecycle management (pause, resume)
- Authorization and access control
- Pagination and filtering
- All autonomy levels
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
FastAPI processes routes in order, so /agents/metrics must be defined
before /agents/{agent_id} to prevent "metrics" from being parsed as a UUID.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Move stats endpoint before {issue_id} routes to prevent UUID parsing errors
- Use remove() instead of soft_delete() since Issue model lacks deleted_at column
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
FastAPI processes routes in order, so /velocity must be defined
before /{sprint_id} to prevent "velocity" from being parsed as a UUID.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Completely rewrote migration 0004 to match current model definitions:
- Added issue_type ENUM (epic, story, task, bug)
- Fixed sprint_status ENUM to include in_review
- Fixed all table columns to match models exactly
- Fixed all indexes and constraints
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add UniqueConstraint to Sprint model to ensure sprint numbers
are unique within a project, matching the migration specification.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
